1YFC Solution nmr structure of a yeast iso-1-ferrocytochrome C date
authors Baistrocchi, P., Banci, L., Bertini, I., Turano, P., Bren, K.L., Gray, H.B.
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand HEC, M3L enzyme
related structures by homologous chain: 1FHB, 1J3S

Primary referenceThree-dimensional solution structure of Saccharomyces cerevisiae reduced iso-1-cytochrome c., Baistrocchi P, Banci L, Bertini I, Turano P, Bren KL, Gray HB, Biochemistry 1996 Oct 29;35(43):13788-96. PMID:8901521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk]
  • Biological Unit Coordinates (1yfc.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1YFC
  • CSU: Contacts of Structural Units for 1YFC
  • Retrieve 1YFC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YFC from S2C, [Save to disk]
  • View 1YFC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YFC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YFC, from MSDmotif at EBI
  • Genome occurence of 1YFC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yfc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yfc] [1yfc_A]
  • SWISS-PROT database: [P00044]
  • Domain organization of [CYC1_YEAST] by SWISSPFAM
  • Other resources with information on 1YFC
  • Community annotation for 1YFC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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