1YFC	Solution nmr structure of a yeast iso-1-ferrocytochrome C	date
authors	Baistrocchi, P., Banci, L., Bertini, I., Turano, P., Bren, K.L., Gray, H.B.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction, 20 Models	resolution
ligand	HEC, M3L	enzyme
related structures	by homologous chain: 1FHB, 1J3S
Gene Ontology	Chain Function Process Component A
Primary reference	Three-dimensional solution structure of Saccharomyces cerevisiae reduced iso-1-cytochrome c., Baistrocchi P, Banci L, Bertini I, Turano P, Bren KL, Gray HB, Biochemistry 1996 Oct 29;35(43):13788-96. PMID:8901521

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk] Biological Unit Coordinates (1yfc.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 1YFC CSU: Contacts of Structural Units for 1YFC Retrieve 1YFC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YFC from S2C, [Save to disk]

View 1YFC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YFC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YFC, from MSDmotif at EBI Genome occurence of 1YFC's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1yfc__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yfc] [1yfc_A] SWISS-PROT database: [P00044] Domain organization of [CYC1_YEAST] by SWISSPFAM

Other resources with information on 1YFC

Community annotation for 1YFC at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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