1FOE Signaling Protein, Immune System Signali date Aug 27, 2000
title Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1
authors D.K.Worthylake, K.L.Rossman, J.Sondek
compound source
Molecule: T-Lymphoma Invasion And Metastasis Inducing Protein 1;
Chain: A, C, E, G
Fragment: Residues 1033 To 1406 From Murine T-Lymphoma Invasion And Metastasis Factor 1, Pleckstrin Homology Domain;
Synonym: Tiam1 Protein, T-Cell Lymphoma Invasion And Metastasis 1;
Engineered: Yes
Mutation: Yes
Other_details: Ala-Met-Gly Cloning Artifact Added To N- Terminus;
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproexhta

Molecule: Ras-Related C3 Botulinum Toxin Substrate
Chain: B, D, F, H
Fragment: Residues 1 To 177 From Human Rac1
Synonym: P21-Rac1, Ras-Like Protein Tc25, Rac1 P21(Small) Gtp-Binding Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: C 1 2 1
R_factor 0.262 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.950 149.270 149.210 90.00 121.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE, SO4 enzyme
related structures by homologous chain: 1AN0, 1EES
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceCrystal structure of Rac1 in complex with the guanine nucleotide exchange region of Tiam1., Worthylake DK, Rossman KL, Sondek J, Nature 2000 Dec 7;408(6813):682-8. PMID:11130063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (366 Kb) [Save to disk]
  • Biological Unit Coordinates (1foe.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (1foe.pdb2.gz) 92 Kb
  • Biological Unit Coordinates (1foe.pdb3.gz) 93 Kb
  • Biological Unit Coordinates (1foe.pdb4.gz) 94 Kb
  • Biological Unit Coordinates (1foe.pdb5.gz) 356 Kb
  • Biological Unit Coordinates (1foe.pdb6.gz) 181 Kb
  • Biological Unit Coordinates (1foe.pdb7.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 1FOE
  • CSU: Contacts of Structural Units for 1FOE
  • Likely Quarternary Molecular Structure file(s) for 1FOE
  • Retrieve 1FOE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FOE from S2C, [Save to disk]
  • View 1FOE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FOE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FOE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1foea1, region A:1034-1239 [Jmol] [rasmolscript] [script source]
        - Domain d1foea2, region A:1240-1401 [Jmol] [rasmolscript] [script source]
        - Domain d1foeb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1foec1, region C:1036-1239 [Jmol] [rasmolscript] [script source]
        - Domain d1foec2, region C:1240-1401 [Jmol] [rasmolscript] [script source]
        - Domain d1foed_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1foee1, region E:1035-1239 [Jmol] [rasmolscript] [script source]
        - Domain d1foee2, region E:1240-1401 [Jmol] [rasmolscript] [script source]
        - Domain d1foef_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1foeg1, region G:1035-1239 [Jmol] [rasmolscript] [script source]
        - Domain d1foeg2, region G:1240-1401 [Jmol] [rasmolscript] [script source]
        - Domain d1foeh_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1foe_E] [1foe_A] [1foe_B] [1foe_C] [1foe] [1foe_D] [1foe_G] [1foe_H] [1foe_F]
  • SWISS-PROT database: [P63000] [Q60610]
  • Domain organization of [RAC1_HUMAN] [TIAM1_MOUSE] by SWISSPFAM
  • Domains found in 1FOE: [PH] [RHO] [RhoGEF ] by SMART
  • Other resources with information on 1FOE
  • Community annotation for 1FOE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FOE from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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