1FQV Ligase date Sep 06, 2000
title Insights Into Scf Ubiquitin Ligases From The Structure Of Th Skp2 Complex
authors B.A.Schulman, A.C.Carrano, P.D.Jeffrey, Z.Bowen, E.R.Kinnucan, M. S.J.Elledge, J.W.Harper, M.Pagano, N.P.Pavletich
compound source
Molecule: Skp2
Chain: A, C, E, G, I, K, M, O
Fragment: 101-436
Synonym: Cyclin Acdk2-Associated Protein P45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Skp1
Chain: B, D, F, H, J, L, N, P
Synonym: Cyclin Acdk2-Associated Protein P19
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.275 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
262.700 148.200 133.300 90.00 120.03 90.00
method X-Ray Diffractionresolution 2.80 Å
note 1FQV (Molecule of the Month:pdb60)
related structures by homologous chain: 1FS1, 1FS2
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, N, D, P, L, B


Primary referenceInsights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex., Schulman BA, Carrano AC, Jeffrey PD, Bowen Z, Kinnucan ER, Finnin MS, Elledge SJ, Harper JW, Pagano M, Pavletich NP, Nature 2000 Nov 16;408(6810):381-6. PMID:11099048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (584 Kb) [Save to disk]
  • Biological Unit Coordinates (1fqv.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb3.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb4.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb5.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb6.gz) 78 Kb
  • Biological Unit Coordinates (1fqv.pdb7.gz) 77 Kb
  • Biological Unit Coordinates (1fqv.pdb8.gz) 78 Kb
  • CSU: Contacts of Structural Units for 1FQV
  • Likely Quarternary Molecular Structure file(s) for 1FQV
  • Retrieve 1FQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FQV from S2C, [Save to disk]
  • View 1FQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FQV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FQV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fqva1, region A:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqva2, region A:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvb2, region B:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvb1, region B:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvc1, region C:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvc2, region C:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvd2, region D:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvd1, region D:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqve1, region E:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqve2, region E:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvf2, region F:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvf1, region F:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvg1, region G:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvg2, region G:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvh2, region H:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvh1, region H:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvi1, region I:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvi2, region I:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvj2, region J:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvj1, region J:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvk1, region K:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvk2, region K:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvl2, region L:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvl1, region L:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvm1, region M:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvm2, region M:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvn2, region N:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvn1, region N:85-160 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvo1, region O:107-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvo2, region O:146-431 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvp2, region P:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fqvp1, region P:85-160 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fqv] [1fqv_N] [1fqv_G] [1fqv_O] [1fqv_L] [1fqv_C] [1fqv_F] [1fqv_D] [1fqv_K] [1fqv_I] [1fqv_H] [1fqv_A] [1fqv_M] [1fqv_P] [1fqv_B] [1fqv_J] [1fqv_E]
  • SWISS-PROT database: [P63208] [Q13309]
  • Domain organization of [SKP1_HUMAN] [SKP2_HUMAN] by SWISSPFAM
  • Domains found in 1FQV: [FBOX] [LRR] [Skp1 ] by SMART
  • Other resources with information on 1FQV
  • Community annotation for 1FQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science