1FS2 INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX date
authors Schulman, B.A., Carrano, A.C., Jeffrey, P.D., Bowen, Z., Kinnucan, E.R.E., Finnin, M.S., Elledge, S.J., Harper, J.W., Pagano, M., Pavletich, N.P.
compound source
symmetry
R_factor
R_Free 0.2870000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
related structures by homologous chain: 1FQV, 1P22
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceInsights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex., Schulman BA, Carrano AC, Jeffrey PD, Bowen Z, Kinnucan ER, Finnin MS, Elledge SJ, Harper JW, Pagano M, Pavletich NP, Nature 2000 Nov 16;408(6810):381-6. PMID:11099048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1fs2.pdb1.gz) 122 Kb
  • CSU: Contacts of Structural Units for 1FS2
  • Likely Quarternary Molecular Structure file(s) for 1FS2
  • Retrieve 1FS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FS2 from S2C, [Save to disk]
    • View 1FS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FS2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FS2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fs2a1, region A:105-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2a2, region A:146-401 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2b2, region B:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2b1, region B:80-146 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2c1, region C:105-145 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2c2, region C:146-401 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2d2, region D:2-68 [Jmol] [rasmolscript] [script source]
        - Domain d1fs2d1, region D:80-146 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fs2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fs2_B] [1fs2_A] [1fs2_D] [1fs2] [1fs2_C]
  • SWISS-PROT database: [P63208] [Q13309]
  • Domain organization of [SKP1_HUMAN] [SKP2_HUMAN] by SWISSPFAM
  • Domains found in 1FS2: [FBOX] [LRR] [Skp1 ] by SMART
    • Other resources with information on 1FS2
  • Community annotation for 1FS2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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