1FZB Blood Coagulation date Aug 05, 1997
title Crystal Structure Of Crosslinked Fragment D
authors G.Spraggon, S.J.Everse, R.F.Doolittle
compound source
Molecule: Fibrinogen
Chain: A, D
Fragment: Double Fragment D
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrinogen
Chain: B, E
Fragment: Double Fragment D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrinogen
Chain: C, F
Fragment: Double Fragment D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Peptide Ligand Gprg
Chain: G, H
Engineered: Yes
Other_details: Bound Peptide Causes The Fibrin Clot Conform

symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.820 95.500 113.760 90.00 96.08 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, NAG enzyme
related structures by homologous chain: 1FZA, 1RF0
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of fragment D from human fibrinogen and its crosslinked counterpart from fibrin., Spraggon G, Everse SJ, Doolittle RF, Nature 1997 Oct 2;389(6650):455-62. PMID:9333233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (1fzb.pdb1.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 1FZB
  • CSU: Contacts of Structural Units for 1FZB
  • Likely Quarternary Molecular Structure file(s) for 1FZB
  • Retrieve 1FZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZB from S2C, [Save to disk]
  • View 1FZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FZB, from MSDmotif at EBI
  • Genome occurence of 1FZB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fzbb2, region B:148-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbb1, region B:200-459 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbc1, region C:142-396 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbc2, region C:88-141 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fzbe2, region E:148-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbe1, region E:200-459 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbf1, region F:142-398 [Jmol] [rasmolscript] [script source]
        - Domain d1fzbf2, region F:88-141 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fzb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fzb_D] [1fzb_H] [1fzb_B] [1fzb_C] [1fzb_G] [1fzb_F] [1fzb_A] [1fzb_E] [1fzb]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 1FZB: [FBG ] by SMART
  • Other resources with information on 1FZB
  • Community annotation for 1FZB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science