1FZA Blood Coagulation date Aug 05, 1997
title Crystal Structure Of Fibrinogen Fragment D
authors G.Spraggon, S.J.Everse, R.F.Doolittle
compound source
Molecule: Fibrinogen
Chain: A, D
Fragment: Fragment D
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrinogen
Chain: B, E
Fragment: Fragment D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrinogen
Chain: C, F
Fragment: Fragment D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood
symmetry Space Group: P 1 21 1
R_factor 0.263 R_Free 0.363
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.720 48.080 167.560 90.00 105.70 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, NAG enzyme
related structures by homologous chain: 1FZB, 1FZE
Primary referenceCrystal structures of fragment D from human fibrinogen and its crosslinked counterpart from fibrin., Spraggon G, Everse SJ, Doolittle RF, Nature 1997 Oct 2;389(6650):455-62. PMID:9333233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (1fza.pdb1.gz) 232 Kb
  • LPC: Ligand-Protein Contacts for 1FZA
  • CSU: Contacts of Structural Units for 1FZA
  • Likely Quarternary Molecular Structure file(s) for 1FZA
  • Retrieve 1FZA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZA from S2C, [Save to disk]
  • View 1FZA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FZA, from MSDmotif at EBI
  • Genome occurence of 1FZA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fzab2, region B:148-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzab1, region B:200-460 [Jmol] [rasmolscript] [script source]
        - Domain d1fzac1, region C:142-396 [Jmol] [rasmolscript] [script source]
        - Domain d1fzac2, region C:88-141 [Jmol] [rasmolscript] [script source]
        - Domain d1fzad_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fzae2, region E:148-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzae1, region E:200-460 [Jmol] [rasmolscript] [script source]
        - Domain d1fzaf1, region F:142-396 [Jmol] [rasmolscript] [script source]
        - Domain d1fzaf2, region F:88-141 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fza from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fza_D] [1fza_F] [1fza_B] [1fza_C] [1fza_E] [1fza] [1fza_A]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 1FZA: [FBG ] by SMART
  • Other resources with information on 1FZA
  • Community annotation for 1FZA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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