1FZC Blood Coagulation date May 19, 1998
title Crystal Structure Of Fragment Double-D From Human Fibrin Wit Different Bound Ligands
authors S.J.Everse, G.Spraggon, L.Veerapandian, M.Riley, R.F.Doolittle
compound source
Molecule: Fibrin
Chain: A, D
Fragment: Double-D
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrin
Chain: B, E
Fragment: Double-D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrin
Chain: C, F
Fragment: Double-D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood

Molecule: Fibrin
Chain: G, H
Fragment: Double-D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood

Molecule: Fibrin
Chain: I, J
Fragment: Double-D

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.443 95.600 113.641 90.00 90.19 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, MAN, NAG enzyme
note 1FZC (Molecule of the Month:pdb83)
related structures by homologous chain: 1RE3, 2FIB
Primary referenceCrystal structure of fragment double-D from human fibrin with two different bound ligands., Everse SJ, Spraggon G, Veerapandian L, Riley M, Doolittle RF, Biochemistry 1998 Jun 16;37(24):8637-42. PMID:9628725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (1fzc.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 1FZC
  • CSU: Contacts of Structural Units for 1FZC
  • Likely Quarternary Molecular Structure file(s) for 1FZC
  • Retrieve 1FZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZC from S2C, [Save to disk]
  • View 1FZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FZC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fzcb2, region B:151-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcb1, region B:200-458 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcc1, region C:142-397 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcc2, region C:97-141 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fzce2, region E:151-199 [Jmol] [rasmolscript] [script source]
        - Domain d1fzce1, region E:200-458 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcf1, region F:142-397 [Jmol] [rasmolscript] [script source]
        - Domain d1fzcf2, region F:97-141 [Jmol] [rasmolscript] [script source]
  • Fold representative 1fzc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fzc_F] [1fzc_E] [1fzc_A] [1fzc_I] [1fzc_H] [1fzc_J] [1fzc_D] [1fzc_G] [1fzc_C] [1fzc] [1fzc_B]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 1FZC: [FBG ] by SMART
  • Alignments of the sequence of 1FZC with the sequences similar proteins can be viewed for 1FZC's classification [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1FZC
  • Community annotation for 1FZC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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