1G6R A FUNCTIONAL HOT SPOT FOR ANTIGEN RECOGNITION IN A SUPERAGONIST TCR/MHC COMPLEX date
authors Degano, M., Garcia, K.C., Apostolopoulos, V., Rudolph, M.G., Teyton, L., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.3267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
related structures by homologous chain: 1BWM, 1I1F, 1MHE, 1NFD, 1QSF
Gene
Ontology
ChainFunctionProcessComponent
A, C


M, L


Primary referenceA functional hot spot for antigen recognition in a superagonist TCR/MHC complex., Degano M, Garcia KC, Apostolopoulos V, Rudolph MG, Teyton L, Wilson IA, Immunity 2000 Mar;12(3):251-61. PMID:10755612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6r.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (1g6r.pdb2.gz) 134 Kb
  • CSU: Contacts of Structural Units for 1G6R
  • Likely Quarternary Molecular Structure file(s) for 1G6R
  • Retrieve 1G6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6R from S2C, [Save to disk]
  • View 1G6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G6R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1G6R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g6ra1, region A:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1g6ra2, region A:118-213 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rb1, region B:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rb2, region B:118-247 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rc1, region C:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rc2, region C:118-213 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rd1, region D:1-117 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rd2, region D:118-247 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rh2, region H:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rh1, region H:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1g6ri2, region I:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1g6ri1, region I:182-274 [Jmol] [rasmolscript] [script source]
        - Domain d1g6rl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1g6rm_, region M [Jmol] [rasmolscript] [script source]
  • Fold representative 1g6r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6r_D] [1g6r_H] [1g6r_Q] [1g6r_M] [1g6r_L] [1g6r_P] [1g6r_B] [1g6r_I] [1g6r_C] [1g6r_A] [1g6r]
  • SWISS-PROT database: [P01887] [P01901] [P01852] [P01738]
  • Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [TCB1_MOUSE] [TVA1_MOUSE] by SWISSPFAM
  • Domains found in 1G6R: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 1G6R
  • Community annotation for 1G6R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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