1G6R	A FUNCTIONAL HOT SPOT FOR ANTIGEN RECOGNITION IN A SUPERAGONIST TCR/MHC COMPLEX	date
authors	Degano, M., Garcia, K.C., Apostolopoulos, V., Rudolph, M.G., Teyton, L., Wilson, I.A.
compound		source
symmetry		R_factor R_Free 0.3267
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.80
related structures	by homologous chain: 1BWM, 1I1F, 1MHE, 1NFD, 1QSF
Gene Ontology	Chain Function Process Component A, C M, L
Primary reference	A functional hot spot for antigen recognition in a superagonist TCR/MHC complex., Degano M, Garcia KC, Apostolopoulos V, Rudolph MG, Teyton L, Wilson IA, Immunity 2000 Mar;12(3):251-61. PMID:10755612

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk] Biological Unit Coordinates (1g6r.pdb1.gz) 134 Kb Biological Unit Coordinates (1g6r.pdb2.gz) 134 Kb CSU: Contacts of Structural Units for 1G6R Likely Quarternary Molecular Structure file(s) for 1G6R Retrieve 1G6R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G6R from S2C, [Save to disk]

View 1G6R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1G6R

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1G6R, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g6ra1, region A:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1g6ra2, region A:118-213 [Jmol] [rasmolscript] [script source]     - Domain d1g6rb1, region B:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1g6rb2, region B:118-247 [Jmol] [rasmolscript] [script source]     - Domain d1g6rc1, region C:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1g6rc2, region C:118-213 [Jmol] [rasmolscript] [script source]     - Domain d1g6rd1, region D:1-117 [Jmol] [rasmolscript] [script source]     - Domain d1g6rd2, region D:118-247 [Jmol] [rasmolscript] [script source]     - Domain d1g6rh2, region H:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1g6rh1, region H:182-274 [Jmol] [rasmolscript] [script source]     - Domain d1g6ri2, region I:1-181 [Jmol] [rasmolscript] [script source]     - Domain d1g6ri1, region I:182-274 [Jmol] [rasmolscript] [script source]     - Domain d1g6rl_, region L [Jmol] [rasmolscript] [script source]     - Domain d1g6rm_, region M [Jmol] [rasmolscript] [script source] Fold representative 1g6r from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g6r_D] [1g6r_H] [1g6r_Q] [1g6r_M] [1g6r_L] [1g6r_P] [1g6r_B] [1g6r_I] [1g6r_C] [1g6r_A] [1g6r] SWISS-PROT database: [P01887] [P01901] [P01852] [P01738] Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [TCB1_MOUSE] [TVA1_MOUSE] by SWISSPFAM Domains found in 1G6R: [IG_like] [IGc1] [IGv ] by SMART

Other resources with information on 1G6R

Community annotation for 1G6R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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