1BWM Immune System date Sep 23, 1998
title A Single-Chain T Cell Receptor
authors B.J.Hare, D.F.Wyss, E.L.Reinherz, G.Wagner
compound source
Molecule: Protein (Alpha-Beta T Cell Receptor (Tcr) (D10))
Chain: A
Fragment: Variable Domains From Alpha And Beta Chains
Engineered: Yes
Mutation: Yes
Other_details: 27-Residue Hydrophilic Linker Connects C Ter Beta Domain With N Terminus Of Alpha Domain
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_cellular_location: Cytoplasmic Inclusion
Expression_system_plasmid: Pet11a
Other_details: Synthetic Gene Connects Alpha And Beta Domai
methodSolution NMR
related structures by homologous chain: 1G6R
Primary referenceStructure, specificity and CDR mobility of a class II restricted single-chain T-cell receptor., Hare BJ, Wyss DF, Osburne MS, Kern PS, Reinherz EL, Wagner G, Nat Struct Biol 1999 Jun;6(6):574-81. PMID:10360364
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (910 Kb) [Save to disk]
  • Biological Unit Coordinates (1bwm.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 1BWM
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BWM from S2C, [Save to disk]
  • View 1BWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BWM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BWM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bwma2, region A:3-116A [Jmol] [rasmolscript] [script source]
        - Domain d1bwma1, region A:301-417 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bwm_A] [1bwm]
  • SWISS-PROT database: [Q5R1G1]
  • Domain organization of [Q5R1G1_MOUSE] by SWISSPFAM
  • Domain found in 1BWM: [IGv ] by SMART
  • Other resources with information on 1BWM
  • Community annotation for 1BWM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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