1G7L Hydrolase Inhibitor Hydrolase date Nov 10, 2000
title Crystal Structure Of Hen Egg White Lysozyme (Hel) Complexed Mutant Anti-Hel Monoclonal Antibody D1.3 (Vlw92s)
authors E.J.Sundberg, M.Urrutia, B.C.Braden, J.Isern, R.A.Mariuzza
compound source
Molecule: Anti-Hen Egg White Lysozyme Monoclonal Antibody D
Chain: A
Fragment: Light Chain
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Anti-Hen Egg White Lysozyme Monoclonal Antibody D
Chain: B
Fragment: Heavy Chain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lysozyme C
Chain: C
Ec: 3.2.1.17

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.630 59.060 55.860 90.00 113.59 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1A7Q, 1D5I, 1IO5, 1P2C, 35C8
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceEstimation of the hydrophobic effect in an antigen-antibody protein-protein interface., Sundberg EJ, Urrutia M, Braden BC, Isern J, Tsuchiya D, Fields BA, Malchiodi EL, Tormo J, Schwarz FP, Mariuzza RA, Biochemistry 2000 Dec 19;39(50):15375-87. PMID:11112523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1g7l.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 1G7L
  • Likely Quarternary Molecular Structure file(s) for 1G7L
  • Structure Factors (200 Kb)
  • Retrieve 1G7L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G7L from S2C, [Save to disk]
  • Re-refined 1g7l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G7L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G7L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G7L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g7la_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1g7lb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1g7lc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g7l_A] [1g7l_C] [1g7l] [1g7l_B]
  • SWISS-PROT database: [P01820] [P00698]
  • Domain organization of [HVM44_MOUSE] [LYSC_CHICK] by SWISSPFAM
  • Domains found in 1G7L: [IGv] [LYZ1 ] by SMART
  • Other resources with information on 1G7L
  • Community annotation for 1G7L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1G7L from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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