35C8	Catalytic Antibody	date	Mar 18, 1998
title	Catalytic Antibody 5c8, Fab-Inhibitor Complex
authors	K.Gruber, I.A.Wilson
compound		source
Molecule: Igg 5c8 Chain: L Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Igg 5c8 Chain: H Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: C 1 2 1	R_factor 0.206 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.200 79.900 65.000 90.00 118.20 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	NOX	enzyme
related structures	by homologous chain: 1D5I, 1G7L, 1LO0, 1P2C
Gene Ontology	Chain Function Process Component L
Primary reference	Structural basis for antibody catalysis of a disfavored ring closure reaction., Gruber K, Zhou B, Houk KN, Lerner RA, Shevlin CG, Wilson IA, Biochemistry 1999 Jun 1;38(22):7062-74. PMID:10353817

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (35c8.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 35C8 CSU: Contacts of Structural Units for 35C8 Likely Quarternary Molecular Structure file(s) for 35C8 Structure Factors (715 Kb) Retrieve 35C8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 35C8 from S2C, [Save to disk] Re-refined 35c8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 35C8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 35C8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 35C8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d35c8h1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d35c8h2, region H:114-226 [Jmol] [rasmolscript] [script source]     - Domain d35c8l1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d35c8l2, region L:108-211 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [35c8_H] [35c8_L] [35c8] SWISS-PROT database: [P01837] Domain organization of [IGKC_MOUSE] by SWISSPFAM Domains found in 35C8: [IG_like] [IGv ] by SMART

Other resources with information on 35C8

Community annotation for 35C8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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