1G9L Rna Binding Protein date Nov 24, 2000
title Solution Structure Of The Pabc Domain Of Human Poly(A) Bindi
authors G.Kozlov, J.F.Trempe, K.Khaleghpour, A.Kahvejian, I.Ekiel, K.Geh
compound source
Molecule: Polyadenylate-Binding Protein 1
Chain: A
Fragment: C-Terminal Domain (Residues 498-636)
Synonym: Poly(A) Binding Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
methodSolution NMR
related structures by homologous chain: 1JGN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of the C-terminal PABC domain of human poly(A)-binding protein., Kozlov G, Trempe JF, Khaleghpour K, Kahvejian A, Ekiel I, Gehring K, Proc Natl Acad Sci U S A 2001 Apr 10;98(8):4409-13. PMID:11287632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1087 Kb) [Save to disk]
  • Biological Unit Coordinates (1g9l.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1G9L
  • Original NMR restraints for 1G9L from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1G9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G9L from S2C, [Save to disk]
  • View 1G9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G9L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g9la_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g9l_A] [1g9l]
  • SWISS-PROT database: [P11940]
  • Domain organization of [PABP1_HUMAN] by SWISSPFAM
  • Domain found in 1G9L: [PolyA ] by SMART
  • Other resources with information on 1G9L
  • Community annotation for 1G9L at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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