1GEH CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE) date
authors Kitano, K., Maeda, N., Fukui, T., Atomi, H., Imanaka, T., Miki, K.
compound source
symmetry
R_factor
R_Free 0.2540000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCrystal structure of a novel-type archaeal rubisco with pentagonal symmetry., Kitano K, Maeda N, Fukui T, Atomi H, Imanaka T, Miki K, Structure (Camb) 2001 Jun;9(6):473-81. PMID:11435112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (1geh.pdb1.gz) 617 Kb
  • LPC: Ligand-Protein Contacts for 1GEH
  • CSU: Contacts of Structural Units for 1GEH
  • Likely Quarternary Molecular Structure file(s) for 1GEH
  • Retrieve 1GEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GEH from S2C, [Save to disk]
  • View 1GEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GEH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GEH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1geha2, region A:12-136 [Jmol] [rasmolscript] [script source]
        - Domain d1geha1, region A:137-443 [Jmol] [rasmolscript] [script source]
        - Domain d1gehb2, region B:12-136 [Jmol] [rasmolscript] [script source]
        - Domain d1gehb1, region B:137-443 [Jmol] [rasmolscript] [script source]
        - Domain d1gehc2, region C:12-136 [Jmol] [rasmolscript] [script source]
        - Domain d1gehc1, region C:137-443 [Jmol] [rasmolscript] [script source]
        - Domain d1gehd2, region D:12-136 [Jmol] [rasmolscript] [script source]
        - Domain d1gehd1, region D:137-443 [Jmol] [rasmolscript] [script source]
        - Domain d1gehe2, region E:12-136 [Jmol] [rasmolscript] [script source]
        - Domain d1gehe1, region E:137-443 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1geh_E] [1geh_C] [1geh] [1geh_A] [1geh_B] [1geh_D]
  • SWISS-PROT database: [O93627]
  • Domain organization of [RBL_PYRKO] by SWISSPFAM
  • Other resources with information on 1GEH
  • Community annotation for 1GEH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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