1GJY Calcium Binding date Aug 06, 2001
title The X-Ray Structure Of The Sorcin Calcium Binding Domain (Scbd) Provides Insight Into The Phosphorylation And Calcium Dependent Processess
authors A.Ilari, K.A.Johnson, V.Nastopoulos, D.Tsernoglou, E.Chiancone
compound source
Molecule: Sorcin
Chain: A, B, C, D
Synonym: Cp-22, V19
 Organism_scientific: Chinese Hamster
Organism_common: Chinese Hamster
Organism_taxid: 10029
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.925 103.847 78.546 90.00 117.96 90.00
method X-Ray Diffractionresolution 2.2 Å
ligand SO4 enzyme
related structures by homologous chain: 1F4O, 1JUO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of the sorcin calcium binding domain provides a model of Ca2+-dependent processes in the full-length protein., Ilari A, Johnson KA, Nastopoulos V, Verzili D, Zamparelli C, Colotti G, Tsernoglou D, Chiancone E, J Mol Biol 2002 Mar 29;317(3):447-58. PMID:11922676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1gjy.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (1gjy.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1GJY
  • CSU: Contacts of Structural Units for 1GJY
  • Likely Quarternary Molecular Structure file(s) for 1GJY
  • Retrieve 1GJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GJY from S2C, [Save to disk]
    • View 1GJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GJY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GJY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gjya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gjyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gjyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gjyd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gjy_A] [1gjy] [1gjy_D] [1gjy_C] [1gjy_B]
  • SWISS-PROT database: [P05044]
  • Domain organization of [SORCN_CRIGR] by SWISSPFAM
  • Domain found in 1GJY: [EFh ] by SMART
    • Other resources with information on 1GJY
  • Community annotation for 1GJY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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