1GK5 Growth Factor date Aug 08, 2001
title Solution Structure The Megftgfalpha44-50 Chimeric Growth Fa
authors S.G.Chamberlin, L.Brennan, S.M.Puddicombe, D.E.Davies, D.L.Turne
compound source
Molecule: Pro-Epidermal Growth Factor,Protransforming Growt Alpha;
Chain: A
Fragment: Unp Residues 977-1018,Unp Residues 83-89
Synonym: Egf
Engineered: Yes
Other_details: The Protein Is A Chimera Of Epidermal Growth Residues 977-1018 And Human Transforming Growth Factor Alph 83-89,The Protein Is A Chimera Of Epidermal Growth Factor R 977-1018 And Human Transforming Growth Factor Alpha Residue
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: House Mouse, Human
Organism_taxid: 10090, 9606
Gene: Egf, Tgfa
Expression_system: Komagataella Pastoris
Expression_system_common: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_vector: Ppic9
methodSolution NMR
related structures by homologous chain: 1JL9, 1P9J
Primary referenceSolution structure of the mEGF/TGFalpha44-50 chimeric growth factor., Chamberlin SG, Brennan L, Puddicombe SM, Davies DE, Turner DL, Eur J Biochem 2001 Dec;268(23):6247-55. PMID:11733021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1gk5.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1GK5
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1GK5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GK5 from S2C, [Save to disk]
  • View 1GK5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GK5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GK5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gk5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gk5_A] [1gk5]
  • SWISS-PROT database: [P01132] [P01135]
  • Domain organization of [EGF_MOUSE] [TGFA_HUMAN] by SWISSPFAM
  • Domain found in 1GK5: [EGF ] by SMART
  • Other resources with information on 1GK5
  • Community annotation for 1GK5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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