1JL9 Signaling Protein date Jul 16, 2001
title Crystal Structure Of Human Epidermal Growth Factor
authors H.S.Lu, J.J.Chai, M.Li, B.R.Huang, C.H.He, R.C.Bi
compound source
Molecule: Epidermal Growth Factor
Chain: A, B
Fragment: Residues 1-51
Synonym: Egf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_vector_type: Plasmid
symmetry Space Group: P 31 2 1
R_factor 0.231 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.430 61.430 87.040 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 1GK5, 1NQL
Primary referenceCrystal structure of human epidermal growth factor and its dimerization., Lu HS, Chai JJ, Li M, Huang BR, He CH, Bi RC, J Biol Chem 2001 Sep 14;276(37):34913-7. PMID:11438527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1jl9.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1JL9
  • Likely Quarternary Molecular Structure file(s) for 1JL9
  • Structure Factors (28 Kb)
  • Retrieve 1JL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JL9 from S2C, [Save to disk]
  • Re-refined 1jl9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JL9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JL9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jl9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jl9b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jl9] [1jl9_B] [1jl9_A]
  • SWISS-PROT database: [P01133]
  • Domain organization of [EGF_HUMAN] by SWISSPFAM
  • Domain found in 1JL9: [EGF ] by SMART
  • Other resources with information on 1JL9
  • Community annotation for 1JL9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science