1GLU Transcription Dna date Aug 30, 1992
title Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna
authors B.F.Luisi, W.X.Xu, Z.Otwinowski, L.P.Freedman, K.R.Yamamoto, P.B.Sigler
compound source
Molecule: Dna (5'- D(Cpcpapgpapapcpaptpcpgpaptpgptptpc Ptpg)-3');
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Glucocorticoid Receptor)
Chain: A, B
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_gene: Gene Fragment (Amino Acids 440 To 525)
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.500 95.700 120.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand ZN enzyme
related structures by homologous chain: 1R4O, 1R4R
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analysis of the interaction of the glucocorticoid receptor with DNA., Luisi BF, Xu WX, Otwinowski Z, Freedman LP, Yamamoto KR, Sigler PB, Nature 1991 Aug 8;352(6335):497-505. PMID:1865905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1glu.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1GLU
  • CSU: Contacts of Structural Units for 1GLU
  • Likely Quarternary Molecular Structure file(s) for 1GLU
  • Retrieve 1GLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GLU from S2C, [Save to disk]
  • View 1GLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GLU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GLU, from MSDmotif at EBI
  • Genome occurence of 1GLU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1glua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1glub_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1glu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1glu_A] [1glu_C] [1glu_D] [1glu_B] [1glu]
  • SWISS-PROT database: [P06536]
  • Domain organization of [GCR_RAT] by SWISSPFAM
  • Domain found in 1GLU: [ZnF_C4 ] by SMART
  • Other resources with information on 1GLU
  • Community annotation for 1GLU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1GLU from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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