1R4R Transcription Dna date Oct 07, 2003
title Crystallographic Analysis Of The Interaction Of The Glucocorticoid Receptor With Dna
authors B.F.Luisi, W.X.Xu, Z.Otwinowski, L.P.Freedman, K.R.Yamamoto, P.B.Sigler
compound source
Molecule: 5'- D(Tpcpapgpapapcpaptpgpaptpgptptpcptpcpa) -3';
Chain: C
Synonym: Ir3 Response Element
Engineered: Yes
Other_details: Idealized Glucocorticoid Response Element Ir3, Top Strand;
Synthetic: Yes

Molecule: 5'- D(Cptpgpapgpapapcpaptpcpaptpgptptpcptpg) -3';
Chain: D
Synonym: Ir3 Response Element
Engineered: Yes
Other_details: Idealized Glucocorticoid Response Element Ir3, Bottom Strand;

Synthetic: Yes

Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Dna Binding Domain
Synonym: Gr
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Nr3c1 Or Grl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7 440-525
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.500 99.700 121.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ZN enzyme
related structures by homologous chain: 1GLU, 1RGD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic analysis of the interaction of the glucocorticoid receptor with DNA., Luisi BF, Xu WX, Otwinowski Z, Freedman LP, Yamamoto KR, Sigler PB, Nature 1991 Aug 8;352(6335):497-505. PMID:1865905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1r4r.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1R4R
  • CSU: Contacts of Structural Units for 1R4R
  • Likely Quarternary Molecular Structure file(s) for 1R4R
  • Retrieve 1R4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R4R from S2C, [Save to disk]
  • View 1R4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R4R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r4ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r4rb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1r4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r4r_A] [1r4r] [1r4r_D] [1r4r_C] [1r4r_B]
  • SWISS-PROT database: [P06536]
  • Domain organization of [GCR_RAT] by SWISSPFAM
  • Domain found in 1R4R: [ZnF_C4 ] by SMART
  • Other resources with information on 1R4R
  • Community annotation for 1R4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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