1RGD Dna Binding Protein date Jan 06, 1995
title Structure Refinement Of The Glucocorticoid Receptor-Dna Bind From Nmr Data By Relaxation Matrix Calculations
authors M.A.A.Van Tilborg, A.M.J.J.Bonvin, K.Hard, A.Davis, B.Maler, R.Bo K.R.Yamamoto, R.Kaptein
compound source
Molecule: Glucocorticoid Receptor
Chain: A
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1R4R, 2GDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure refinement of the glucocorticoid receptor-DNA binding domain from NMR data by relaxation matrix calculations., van Tilborg MA, Bonvin AM, Hard K, Davis AL, Maler B, Boelens R, Yamamoto KR, Kaptein R, J Mol Biol 1995 Apr 7;247(4):689-700. PMID:7723024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1rgd.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1RGD
  • CSU: Contacts of Structural Units for 1RGD
  • Retrieve 1RGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RGD from S2C, [Save to disk]
  • View 1RGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RGD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RGD, from MSDmotif at EBI
  • Genome occurence of 1RGD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rgd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rgd] [1rgd_A]
  • SWISS-PROT database: [P06536]
  • Domain organization of [GCR_RAT] by SWISSPFAM
  • Domain found in 1RGD: [ZnF_C4 ] by SMART
  • Other resources with information on 1RGD
  • Community annotation for 1RGD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1RGD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science