1GPE Oxidoreductase(Flavoprotein) date Mar 24, 1999
title Glucose Oxidase From Penicillium Amagasakiense
authors J.Hendle, H.M.Kalisz, H.J.Hecht
compound source
Molecule: Protein (Glucose Oxidase)
Chain: A, B
Ec: 1.1.3.4
 Organism_scientific: Penicillium Amagasakiense
Organism_taxid: 63559
symmetry Space Group: P 21 21 21
R_factor 0.160 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.600 132.100 151.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BMA, FAD, MAN, NAG enzyme Oxidoreductase E.C.1.1.3.4 BRENDA
note 1GPE (Molecule of the Month:pdb77)
related structures by homologous chain: 1CF3
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference1.8 and 1.9 A resolution structures of the Penicillium amagasakiense and Aspergillus niger glucose oxidases as a basis for modelling substrate complexes., Wohlfahrt G, Witt S, Hendle J, Schomburg D, Kalisz HM, Hecht HJ, Acta Crystallogr D Biol Crystallogr 1999 May;55(5):969-77. PMID:10216293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (1gpe.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 1GPE
  • CSU: Contacts of Structural Units for 1GPE
  • Likely Quarternary Molecular Structure file(s) for 1GPE
  • Structure Factors (791 Kb)
  • Retrieve 1GPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GPE from S2C, [Save to disk]
  • Re-refined 1gpe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1GPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GPE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GPE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gpea1, region A:1-328,A:525-587 [Jmol] [rasmolscript] [script source]
        - Domain d1gpea2, region A:329-524 [Jmol] [rasmolscript] [script source]
        - Domain d1gpeb1, region B:1-328,B:525-587 [Jmol] [rasmolscript] [script source]
        - Domain d1gpeb2, region B:329-524 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gpe] [1gpe_A] [1gpe_B]
  • SWISS-PROT database: [P81156]
  • Domain organization of [GOX_PENAG] by SWISSPFAM
    • Other resources with information on 1GPE
  • Community annotation for 1GPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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