1GPL Serine Esterase date Jul 13, 1996
title Rp2 Lipase
authors C.Withers-Martinez, C.Cambillau
compound source
Molecule: Rp2 Lipase
Chain: A
Synonym: Related Protein 2 Lipase
Ec: 3.1.1.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Cavia Porcellus
Organism_common: Domestic Guinea Pig
Organism_taxid: 10141
Cell_line: Sf9
Organ: Pancreatic
Expression_system: Sf9 Cells
Expression_system_strain: Sf9
Expression_system_vector: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.000 55.900 144.000 90.00 93.20 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand CA enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1BU8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA pancreatic lipase with a phospholipase A1 activity: crystal structure of a chimeric pancreatic lipase-related protein 2 from guinea pig., Withers-Martinez C, Carriere F, Verger R, Bourgeois D, Cambillau C, Structure 1996 Nov 15;4(11):1363-74. PMID:8939760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1gpl.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 1GPL
  • CSU: Contacts of Structural Units for 1GPL
  • Likely Quarternary Molecular Structure file(s) for 1GPL
  • Retrieve 1GPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GPL from S2C, [Save to disk]
  • View 1GPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GPL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GPL, from MSDmotif at EBI
  • Genome occurence of 1GPL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gpl_2, region 1-336 [Jmol] [rasmolscript] [script source]
        - Domain d1gpl_1, region 337-449 [Jmol] [rasmolscript] [script source]
  • Fold representative 1gpl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gpl] [1gpl_A]
  • SWISS-PROT database: [P16233]
  • Domain organization of [LIPP_HUMAN] by SWISSPFAM
  • Domain found in 1GPL: [LH2 ] by SMART
  • Other resources with information on 1GPL
  • Community annotation for 1GPL at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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