1BU8 Hydrolase date Sep 14, 1998
title Rat Pancreatic Lipase Related Protein 2
authors A.Roussel, C.Cambillau
compound source
Molecule: Protein (Pancreatic Lipase Related Protein 2)
Chain: A
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Pancreas
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.393 79.133 60.940 90.00 102.07 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NAG enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1GPL, 1RP1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and activity of rat pancreatic lipase-related protein 2., Roussel A, Yang Y, Ferrato F, Verger R, Cambillau C, Lowe M, J Biol Chem 1998 Nov 27;273(48):32121-8. PMID:9822688
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1bu8.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1BU8
  • CSU: Contacts of Structural Units for 1BU8
  • Likely Quarternary Molecular Structure file(s) for 1BU8
  • Structure Factors (348 Kb)
  • Retrieve 1BU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BU8 from S2C, [Save to disk]
  • Re-refined 1bu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BU8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1BU8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bu8a2, region A:1-336 [Jmol] [rasmolscript] [script source]
        - Domain d1bu8a1, region A:337-449 [Jmol] [rasmolscript] [script source]
  • Fold representative 1bu8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bu8] [1bu8_A]
  • SWISS-PROT database: [P54318]
  • Domain organization of [LIPR2_RAT] by SWISSPFAM
  • Domain found in 1BU8: [LH2 ] by SMART
  • Other resources with information on 1BU8
  • Community annotation for 1BU8 at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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