1GQF Hydrolase date Nov 23, 2001
title Crystal Structure Of Human Procaspase-7
authors S.Riedl, W.Bode, P.Fuentes-Prior
compound source
Molecule: Caspase-7
Chain: A, B
Synonym: Casp-7,Apoptotic Protease Mch-3,Cmh-1,Ice-Like Apo Protease 3,Ice-Lap3;
Ec: 3.4.22.60
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp7, Mch3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.268 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.210 90.210 183.020 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme Hydrolase E.C.3.4.22.60 BRENDA
related structures by homologous chain: 1KMC, 1RHR, 1SHL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the activation of human procaspase-7., Riedl SJ, Fuentes-Prior P, Renatus M, Kairies N, Krapp S, Huber R, Salvesen GS, Bode W, Proc Natl Acad Sci U S A 2001 Dec 18;98(26):14790-5. PMID:11752425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1gqf.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1GQF
  • CSU: Contacts of Structural Units for 1GQF
  • Likely Quarternary Molecular Structure file(s) for 1GQF
  • Retrieve 1GQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GQF from S2C, [Save to disk]
  • View 1GQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GQF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GQF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gqfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gqfb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1gqf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gqf_A] [1gqf] [1gqf_B]
  • SWISS-PROT database: [P55210]
  • Domain organization of [CASP7_HUMAN] by SWISSPFAM
  • Domain found in 1GQF: [CASc ] by SMART
  • Other resources with information on 1GQF
  • Community annotation for 1GQF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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