1KMC Apoptosis Hydrolase date Dec 14, 2001
title Crystal Structure Of The Caspase-7 Xiap-Bir2 Complex
authors S.J.Riedl, G.S.Salvesen, W.Bode
compound source
Molecule: Caspase-7
Chain: A, B
Ec: 3.4.22.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Pet23

Molecule: X-Linked Inhibitor Of Apoptosis Protein
Chain: C, D
Fragment: Xiap-Bir2
Synonym: Xiap
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Pgex4t1
symmetry Space Group: P 32 2 1
R_factor 0.234 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.130 88.130 186.450 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
related structures by homologous chain: 1GQF, 1SHJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1kmc.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 1KMC
  • Likely Quarternary Molecular Structure file(s) for 1KMC
  • Retrieve 1KMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KMC from S2C, [Save to disk]
  • View 1KMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KMC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KMC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kmca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kmcb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kmc] [1kmc_A] [1kmc_B] [1kmc_C] [1kmc_D]
  • SWISS-PROT database: [P55210] [P98170]
  • Domain organization of [CASP7_HUMAN] [XIAP_HUMAN] by SWISSPFAM
  • Domains found in 1KMC: [BIR] [CASc ] by SMART
  • Other resources with information on 1KMC
  • Community annotation for 1KMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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