1GZ6	Dehydrogenase	date	May 16, 2002
title	3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2
authors	A.M.Haapalainen, J.K.Hiltunen, T.Glumoff
compound		source
Molecule: Estradiol 17 Beta-Dehydrogenase 4 Chain: A, B, C, D Fragment: (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment, Residues 1-319; Synonym: 17-Beta-Hsd 4,17-Beta-Hydroxysteroid Dehydrogenase, Hsd Iv17-Beta-Hsd 4; Ec: 1.1.1.62 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Organ: Liver Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet-3d Expression_system_plasmid: Pet3ddhdeltascp-2ldelta
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.466 82.748 95.745 90.00 94.20 90.00
method	X-Ray Diffraction	resolution	2.38 Å
ligand	MSE, NAI, SO4	enzyme	Oxidoreductase E.C.1.1.1.62 BRENDA
related structures	by homologous chain: 1WXD, 1ZBQ
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Binary structure of the two-domain (3R)-hydroxyacyl-CoA dehydrogenase from rat peroxisomal multifunctional enzyme type 2 at 2.38 A resolution., Haapalainen AM, Koski MK, Qin YM, Hiltunen JK, Glumoff T, Structure (Camb) 2003 Jan;11(1):87-97. PMID:12517343

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk] Biological Unit Coordinates (1gz6.pdb1.gz) 101 Kb Biological Unit Coordinates (1gz6.pdb2.gz) 104 Kb LPC: Ligand-Protein Contacts for 1GZ6 CSU: Contacts of Structural Units for 1GZ6 Likely Quarternary Molecular Structure file(s) for 1GZ6 Structure Factors (396 Kb) Retrieve 1GZ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GZ6 from S2C, [Save to disk] Re-refined 1gz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GZ6 in 3D

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Visual 3D analysis of 1GZ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GZ6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gz6a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1gz6b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1gz6c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1gz6d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gz6_A] [1gz6_C] [1gz6_D] [1gz6_B] [1gz6] SWISS-PROT database: [P97852] Domain organization of [DHB4_RAT] by SWISSPFAM

Other resources with information on 1GZ6

Community annotation for 1GZ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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