1GZ8 Transferase date May 17, 2002
title Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 6-(3'-Methyl-2'-Oxo)Butoxypurine
authors T.Davies, J.Endicott, L.Johnson, M.Noble, J.Tucker
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase, Cyclin-Dependent Protein Kinas
Ec: 2.7.1.37
Engineered: Yes
Other_details: Complex With Cyclin A Or Cyclin E
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.151 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.860 71.070 71.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CSD, MBP enzyme Transferase E.C.2.7.1.37 BRENDA
note 1GZ8 is a representative structure
related structures by homologous chain: 1JVP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the ATP ribose-binding domain of cyclin-dependent kinases 1 and 2 with O(6)-substituted guanine derivatives., Gibson AE, Arris CE, Bentley J, Boyle FT, Curtin NJ, Davies TG, Endicott JA, Golding BT, Grant S, Griffin RJ, Jewsbury P, Johnson LN, Mesguiche V, Newell DR, Noble ME, Tucker JA, Whitfield HJ, J Med Chem 2002 Aug 1;45(16):3381-93. PMID:12139449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1gz8.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1GZ8
  • CSU: Contacts of Structural Units for 1GZ8
  • Likely Quarternary Molecular Structure file(s) for 1GZ8
  • Structure Factors (442 Kb)
  • Retrieve 1GZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GZ8 from S2C, [Save to disk]
  • Re-refined 1gz8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GZ8 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GZ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gz8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gz8_A] [1gz8]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1GZ8: [S_TKc ] by SMART
  • Other resources with information on 1GZ8
  • Community annotation for 1GZ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science