1JVP Transferase date Aug 31, 2001
title Crystal Structure Of Human Cdk2 (Unphosphorylated) In Comple Pkf049-365
authors J.M.Rondeau
compound source
Molecule: Cell Division Protein Kinase 2
Chain: P
Synonym: P33 Protein Kinase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: H5 (Trichoplusia Ni)
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
53.528 71.802 72.362 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand 89E, LIG enzyme Transferase E.C. BRENDA
related structures by homologous chain: 1GZ8, 1H00

Primary referenceStructure-based design and protein X-ray analysis of a protein kinase inhibitor., Furet P, Meyer T, Strauss A, Raccuglia S, Rondeau JM, Bioorg Med Chem Lett 2002 Jan 21;12(2):221-4. PMID:11755359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1jvp.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1JVP
  • CSU: Contacts of Structural Units for 1JVP
  • Likely Quarternary Molecular Structure file(s) for 1JVP
  • Structure Factors (393 Kb)
  • Retrieve 1JVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JVP from S2C, [Save to disk]
  • Re-refined 1jvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JVP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jvpp_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jvp_P] [1jvp]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1JVP: [S_TKc ] by SMART
  • Other resources with information on 1JVP
  • Community annotation for 1JVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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