1H0C	Transferase	date	Jun 17, 2002
title	The Crystal Structure Of Human Alanine:Glyoxylate Aminotrans
authors	X.Zhang, C.J.Danpure, S.M.Roe, L.H.Pearl
compound		source
Molecule: Serine--Glyoxylate Aminotransferase Chain: A Synonym: Agt, Spt, Alanine--Glyoxylate Aminotransferase Ec: 2.6.1.44, 2.6.1.51 Engineered: Yes Other_details: Lysine - Pyridoxal Phosphate At A 209		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109
symmetry	Space Group: P 41 21 2	R_factor 0.231 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.330 90.330 142.010 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	AOA, GOL, PLP	enzyme	Transferase E.C.2.6.1.44 BRENDA
related structures	by homologous chain: 1J04
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of alanine:glyoxylate aminotransferase and the relationship between genotype and enzymatic phenotype in primary hyperoxaluria type 1., Zhang X, Roe SM, Hou Y, Bartlam M, Rao Z, Pearl LH, Danpure CJ, J Mol Biol 2003 Aug 15;331(3):643-52. PMID:12899834

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1h0c.pdb1.gz) 127 Kb LPC: Ligand-Protein Contacts for 1H0C CSU: Contacts of Structural Units for 1H0C Likely Quarternary Molecular Structure file(s) for 1H0C Structure Factors (261 Kb) Retrieve 1H0C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H0C from S2C, [Save to disk] Re-refined 1h0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H0C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H0C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H0C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h0ca_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h0c] [1h0c_A] SWISS-PROT database: [P21549] Domain organization of [SPYA_HUMAN] by SWISSPFAM

Other resources with information on 1H0C

Community annotation for 1H0C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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