1H0D	Immune System Hydrolase	date	Jun 19, 2002
title	Crystal Structure Of Human Angiogenin In Complex With Fab Fr Its Monoclonal Antibody Mab 26-2f
authors	G.B.Chavali, A.C.Papageorgiou, K.R.Acharya
compound		source
Molecule: Antibody Fab Fragment, Light Chain Chain: A Engineered: Yes Other_details: Hinge Region Observed In The Fab Fragment		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Antibody Fab Fragment, Heavy Chain Chain: B Engineered: Yes Other_details: Hinge Region Observed In The Fab Fragment		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Angiogenin Chain: C Synonym: Ribonuclease 5, Rnase 5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.232 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.580 72.530 86.990 90.00 112.46 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GOL, PCA, SO4	enzyme
related structures	by homologous chain: 1B1E, 1FE8, 1H52, 1NBV, 25C8
Gene Ontology	Chain Function Process Component C nuclease activity endonuclease activity ribonuclease activity nucleus
Primary reference	The crystal structure of human angiogenin in complex with an antitumor neutralizing antibody., Chavali GB, Papageorgiou AC, Olson KA, Fett JW, Hu G, Shapiro R, Acharya KR, Structure (Camb) 2003 Jul;11(7):875-85. PMID:12842050

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk] Biological Unit Coordinates (1h0d.pdb1.gz) 94 Kb LPC: Ligand-Protein Contacts for 1H0D CSU: Contacts of Structural Units for 1H0D Likely Quarternary Molecular Structure file(s) for 1H0D Retrieve 1H0D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H0D from S2C, [Save to disk]

View 1H0D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H0D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H0D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h0da1, region A:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1h0da2, region A:107-211 [Jmol] [rasmolscript] [script source]     - Domain d1h0db1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1h0db2, region B:114-215 [Jmol] [rasmolscript] [script source]     - Domain d1h0dc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h0d_B] [1h0d_A] [1h0d_C] [1h0d] SWISS-PROT database: [P03950] Domain organization of [ANGI_HUMAN] by SWISSPFAM Domains found in 1H0D: [IG_like] [IGv] [RNAse_Pc ] by SMART

Other resources with information on 1H0D

Community annotation for 1H0D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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