1NBV Immunoglobulin date Mar 16, 1993
title An Autoantibody To Single-Stranded Dna: Comparison Of The Th Dimensional Structures Of The Unliganded Fab And A Deoxynuc Fab Complex
authors J.N.Herron, X.M.He, A.B.Edmundson
compound source
Molecule: Igg2b-Kappa Bv04-01 Fab (Light Chain)
Chain: L
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Igg2b-Kappa Bv04-01 Fab (Heavy Chain)
Chain: H
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 1
R_factor 0.246 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.400 43.700 41.500 83.40 89.40 84.40
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1H0D, 1UB5
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceAn autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex., Herron JN, He XM, Ballard DW, Blier PR, Pace PE, Bothwell AL, Voss EW Jr, Edmundson AB, Proteins 1991;11(3):159-75. PMID:1749770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1nbv.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 1NBV
  • Likely Quarternary Molecular Structure file(s) for 1NBV
  • Retrieve 1NBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NBV from S2C, [Save to disk]
    • View 1NBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NBV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NBV, from MSDmotif at EBI
  • Genome occurence of 1NBV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nbvh1, region H:1-122 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvh2, region H:123-219 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvl1, region L:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvl2, region L:113-219 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nbv_H] [1nbv_L] [1nbv]
  • SWISS-PROT database: [P01867]
  • Domain organization of [IGG2B_MOUSE] by SWISSPFAM
  • Domains found in 1NBV: [IG_like] [IGv ] by SMART
    • Other resources with information on 1NBV
  • Community annotation for 1NBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1NBV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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