1NBV AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX date
authors Herron, J.N., He, X.M., Edmundson, A.B.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1H0D, 1UB5
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceAn autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex., Herron JN, He XM, Ballard DW, Blier PR, Pace PE, Bothwell AL, Voss EW Jr, Edmundson AB, Proteins 1991;11(3):159-75. PMID:1749770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1nbv.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 1NBV
  • Likely Quarternary Molecular Structure file(s) for 1NBV
  • Retrieve 1NBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NBV from S2C, [Save to disk]
    • View 1NBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NBV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NBV, from MSDmotif at EBI
  • Genome occurence of 1NBV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nbvh1, region H:1-122 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvh2, region H:123-219 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvl1, region L:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1nbvl2, region L:113-219 [Jmol] [rasmolscript] [script source]
  • Fold representative 1nbv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nbv_H] [1nbv_L] [1nbv]
  • SWISS-PROT database: [P01867]
  • Domain organization of [IGG2B_MOUSE] by SWISSPFAM
  • Domains found in 1NBV: [IG_like] [IGv ] by SMART
    • Other resources with information on 1NBV
  • Community annotation for 1NBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1NBV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science