1UB5	Immune System	date	Mar 30, 2003
title	Crystal Structure Of Antibody 19g2 With Hapten At 100k
authors	A.B.Beuscher, P.Wirsching, R.A.Lerner, K.Janda, R.C.Stevens
compound		source
Molecule: Antibody 19g2, Alpha Chain Chain: H, A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
Molecule: Antibody 19g2, Beta Chain Chain: L, B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 195.933 61.058 92.589 90.00 117.05 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	SPB	enzyme
related structures	by homologous chain: 1FE8, 1JTT, 1NBV, 1UZ6
Gene Ontology	Chain Function Process Component L, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (1ub5.pdb1.gz) 72 Kb Biological Unit Coordinates (1ub5.pdb2.gz) 73 Kb LPC: Ligand-Protein Contacts for 1UB5 CSU: Contacts of Structural Units for 1UB5 Likely Quarternary Molecular Structure file(s) for 1UB5 Structure Factors (868 Kb) Retrieve 1UB5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UB5 from S2C, [Save to disk] Re-refined 1ub5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UB5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UB5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UB5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ub5a1, region A:1-116 [Jmol] [rasmolscript] [script source]     - Domain d1ub5a2, region A:117-214 [Jmol] [rasmolscript] [script source]     - Domain d1ub5b1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1ub5b2, region B:114-214 [Jmol] [rasmolscript] [script source]     - Domain d1ub5h1, region H:1-116 [Jmol] [rasmolscript] [script source]     - Domain d1ub5h2, region H:117-214 [Jmol] [rasmolscript] [script source]     - Domain d1ub5l1, region L:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1ub5l2, region L:114-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ub5_A] [1ub5] [1ub5_H] [1ub5_B] [1ub5_L] SWISS-PROT database: [P01867] Domain organization of [IGG2B_MOUSE] by SWISSPFAM Domains found in 1UB5: [IG_like] [IGv ] by SMART

Other resources with information on 1UB5

Community annotation for 1UB5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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