1UZ6	Immune System	date	Mar 05, 2004
title	Anti-Lewis X Fab Fragment Uncomplexed
authors	A.M.M.Van Roon, N.S.Pannu, J.P.M.De Vrind, C.H.Hokke, A.M.Deelde Der Marel, J.H.Van Boom, J.P.Abrahams
compound		source
Molecule: Igg Fab (Igg3, Kappa) Light Chain 291-2g3-A Chain: E, L, M, V Fragment: Fab Fragment Light Chain, Residues 1-212		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Cell_line: Murine Hybridoma
Molecule: Igg Fab (Igg3, Kappa) Heavy Chain 291-2g3-A Chain: F, H, P, W Fragment: Fab Fragment Heavy Chain, Residues 1-213		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Cell_line: Murine Hybridoma
symmetry	Space Group: P 1	R_factor 0.198 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.405 71.559 104.790 86.48 71.32 83.26
method	X-Ray Diffraction	resolution	2.05 Å
ligand	SO4	enzyme
related structures	by homologous chain: 1FE8, 1RFD, 1UB5
Primary reference	Structure of an anti-Lewis X Fab fragment in complex with its Lewis X antigen., van Roon AM, Pannu NS, de Vrind JP, van der Marel GA, van Boom JH, Hokke CH, Deelder AM, Abrahams JP, Structure. 2004 Jul;12(7):1227-36. PMID:15242599

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk] Biological Unit Coordinates (1uz6.pdb1.gz) 70 Kb Biological Unit Coordinates (1uz6.pdb2.gz) 70 Kb Biological Unit Coordinates (1uz6.pdb3.gz) 70 Kb Biological Unit Coordinates (1uz6.pdb4.gz) 70 Kb LPC: Ligand-Protein Contacts for 1UZ6 CSU: Contacts of Structural Units for 1UZ6 Likely Quarternary Molecular Structure file(s) for 1UZ6 Structure Factors (1545 Kb) Retrieve 1UZ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UZ6 from S2C, [Save to disk] Re-refined 1uz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UZ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UZ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UZ6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uz6e1, region E:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1uz6e2, region E:107-210 [Jmol] [rasmolscript] [script source]     - Domain d1uz6f1, region F:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1uz6f2, region F:114-212 [Jmol] [rasmolscript] [script source]     - Domain d1uz6h1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1uz6h2, region H:114-212 [Jmol] [rasmolscript] [script source]     - Domain d1uz6l1, region L:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1uz6l2, region L:107-210 [Jmol] [rasmolscript] [script source]     - Domain d1uz6m1, region M:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1uz6m2, region M:107-210 [Jmol] [rasmolscript] [script source]     - Domain d1uz6p1, region P:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1uz6p2, region P:114-212 [Jmol] [rasmolscript] [script source]     - Domain d1uz6v1, region V:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1uz6v2, region V:107-210 [Jmol] [rasmolscript] [script source]     - Domain d1uz6w1, region W:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1uz6w2, region W:114-212 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uz6_E] [1uz6_F] [1uz6_L] [1uz6_W] [1uz6_M] [1uz6_V] [1uz6_P] [1uz6_H] [1uz6] SWISS-PROT database: [P01811] Domain organization of [HVM41_MOUSE] by SWISSPFAM Domains found in 1UZ6: [IG_like] [IGv ] by SMART

Other resources with information on 1UZ6

Community annotation for 1UZ6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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