1UZ6 anti-Lewis X Fab fragment uncomplexed date
authors Roon, A.M.M.Van., Pannu, N.S., Vrind, J.P.M.De., Hokke, C.H., Deelder, A.M., marel, G.A.Van.Der., Boom, J.H.Van., Abrahams, J.P.
compound source
symmetry
R_factor
R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand SO4 enzyme
related structures by homologous chain: 1FE8, 1RFD, 1UB5
Primary referenceStructure of an anti-Lewis X Fab fragment in complex with its Lewis X antigen., van Roon AM, Pannu NS, de Vrind JP, van der Marel GA, van Boom JH, Hokke CH, Deelder AM, Abrahams JP, Structure. 2004 Jul;12(7):1227-36. PMID:15242599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (1uz6.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1uz6.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (1uz6.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (1uz6.pdb4.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1UZ6
  • CSU: Contacts of Structural Units for 1UZ6
  • Likely Quarternary Molecular Structure file(s) for 1UZ6
  • Structure Factors (1545 Kb)
  • Retrieve 1UZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UZ6 from S2C, [Save to disk]
  • Re-refined 1uz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UZ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UZ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uz6e1, region E:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6e2, region E:107-210 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6f1, region F:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6f2, region F:114-212 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6h1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6h2, region H:114-212 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6l1, region L:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6l2, region L:107-210 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6m1, region M:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6m2, region M:107-210 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6p1, region P:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6p2, region P:114-212 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6v1, region V:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6v2, region V:107-210 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6w1, region W:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1uz6w2, region W:114-212 [Jmol] [rasmolscript] [script source]
  • Fold representative 1uz6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uz6_E] [1uz6_F] [1uz6_L] [1uz6_W] [1uz6_M] [1uz6_V] [1uz6_P] [1uz6_H] [1uz6]
  • SWISS-PROT database: [P01811]
  • Domain organization of [HVM41_MOUSE] by SWISSPFAM
  • Domains found in 1UZ6: [IG_like] [IGv ] by SMART
  • Other resources with information on 1UZ6
  • Community annotation for 1UZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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