1H4R Structural Protein date May 14, 2001
title Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein.
authors D.R.Cooper, B.S.Kang, P.Sheffield, Y.Devedjiev, Z.S.Derewenda
compound source
Molecule: Merlin
Chain: A, B
Fragment: Ferm Domain Residues 1-313
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Gateway Pdest15
Expression_system_plasmid: Phgm313
Other_details: Recombinantly Expressed In Bl21-Ril Cells As A Hexa-Histidine And Gst Tagged Protein. The Tag Was Removed By Rtev Cleavage.
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.018 89.328 96.764 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand SO4 enzyme
related structures by homologous chain: 1EF1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of the FERM domain of merlin, the neurofibromatosis type 2 gene product., Kang BS, Cooper DR, Devedjiev Y, Derewenda U, Derewenda ZS, Acta Crystallogr D Biol Crystallogr 2002 Mar;58(Pt 3):381-91. PMID:11856822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1h4r.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1H4R
  • CSU: Contacts of Structural Units for 1H4R
  • Likely Quarternary Molecular Structure file(s) for 1H4R
  • Structure Factors (507 Kb)
  • Retrieve 1H4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H4R from S2C, [Save to disk]
  • Re-refined 1h4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H4R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1H4R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h4ra1, region A:104-214 [Jmol] [rasmolscript] [script source]
        - Domain d1h4ra3, region A:20-103 [Jmol] [rasmolscript] [script source]
        - Domain d1h4ra2, region A:215-313 [Jmol] [rasmolscript] [script source]
        - Domain d1h4rb1, region B:104-214 [Jmol] [rasmolscript] [script source]
        - Domain d1h4rb3, region B:20-103 [Jmol] [rasmolscript] [script source]
        - Domain d1h4rb2, region B:215-313 [Jmol] [rasmolscript] [script source]
  • Fold representative 1h4r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h4r_A] [1h4r_B] [1h4r]
  • SWISS-PROT database: [P35240]
  • Domain organization of [MERL_HUMAN] by SWISSPFAM
  • Domain found in 1H4R: [B41 ] by SMART
  • Alignments of the sequence of 1H4R with the sequences similar proteins can be viewed for 1H4R's classification [MERL_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MERL_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1H4R
  • Community annotation for 1H4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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