1H5Y HisF protein from Pyrobaculum aerophilum date
authors Banfield, M.J., Lott, J.S., McCarthy, A.A., Baker, E.N.
compound source
R_Free 0.22724
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand GOL, PO4 enzyme
related structures by homologous chain: 1KA9
A, B

Primary referenceStructure of HisF, a histidine biosynthetic protein from Pyrobaculum aerophilum., Banfield MJ, Lott JS, Arcus VL, McCarthy AA, Baker EN, Acta Crystallogr D Biol Crystallogr 2001 Nov;57(Pt 11):1518-25. PMID:11679715
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1h5y.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (1h5y.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1H5Y
  • CSU: Contacts of Structural Units for 1H5Y
  • Likely Quarternary Molecular Structure file(s) for 1H5Y
  • Structure Factors (870 Kb)
  • Retrieve 1H5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H5Y from S2C, [Save to disk]
  • Re-refined 1h5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H5Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h5ya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h5yb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h5y] [1h5y_A] [1h5y_B]
  • SWISS-PROT database: [Q8ZY16]
  • Domain organization of [HIS6_PYRAE] by SWISSPFAM
  • Other resources with information on 1H5Y
  • Community annotation for 1H5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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