1H6D	Protein Translocation	date	Jun 12, 2001
title	Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis Complexed With Glycerol
authors	D.Nurizzo, E.N.Baker
compound		source
Molecule: Precursor Form Of Glucose-Fructose Oxidoreductase; Chain: A, B, C, D, E, F, G, H, I, J, K, L Ec: 1.1.99.28 Engineered: Yes Other_details: Nadp, Glycerol		Organism_scientific: Zymomonas Mobilis Organism_taxid: 542 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.724 83.752 279.149 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	GOL, NDP	enzyme	Oxidoreductase E.C.1.1.99.28 BRENDA
related structures	by homologous chain: 1RYD
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Crystal structures of the precursor form of glucose-fructose oxidoreductase from Zymomonas mobilis and its complexes with bound ligands., Nurizzo D, Halbig D, Sprenger GA, Baker EN, Biochemistry 2001 Nov 20;40(46):13857-67. PMID:11705375

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (813 Kb) [Save to disk] Biological Unit Coordinates (1h6d.pdb1.gz) 273 Kb Biological Unit Coordinates (1h6d.pdb2.gz) 274 Kb Biological Unit Coordinates (1h6d.pdb3.gz) 278 Kb LPC: Ligand-Protein Contacts for 1H6D CSU: Contacts of Structural Units for 1H6D Likely Quarternary Molecular Structure file(s) for 1H6D Structure Factors (2521 Kb) Retrieve 1H6D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H6D from S2C, [Save to disk] Re-refined 1h6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H6D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H6D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H6D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h6da2, region A:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6da1, region A:51-212,A:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6db2, region B:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6db1, region B:53-212,B:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dc2, region C:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dc1, region C:52-212,C:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dd2, region D:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dd1, region D:52-212,D:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6de2, region E:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6de1, region E:52-212,E:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6df2, region F:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6df1, region F:53-212,F:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dg2, region G:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dg1, region G:53-212,G:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dh2, region H:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dh1, region H:53-212,H:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6di2, region I:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6di1, region I:52-212,I:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dj2, region J:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dj1, region J:53-212,J:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dk2, region K:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dk1, region K:52-212,K:375-433 [Jmol] [rasmolscript] [script source]     - Domain d1h6dl2, region L:213-374 [Jmol] [rasmolscript] [script source]     - Domain d1h6dl1, region L:53-212,L:375-433 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h6d] [1h6d_A] [1h6d_C] [1h6d_J] [1h6d_B] [1h6d_K] [1h6d_I] [1h6d_G] [1h6d_L] [1h6d_D] [1h6d_H] [1h6d_E] [1h6d_F] SWISS-PROT database: [Q07982] Domain organization of [GFO_ZYMMO] by SWISSPFAM

Other resources with information on 1H6D

Community annotation for 1H6D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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