1H8O	Antibody	date	Feb 14, 2001
title	Three-Dimensional Structure Of Anti-Ampicillin Single Chain Fragment.
authors	J.Burmester, S.Spinelli, L.Pugliese, A.Krebber, A.Honegger, S.Jun B.Schimmele, C.Cambillau, A.Pluckthun
compound		source
Molecule: Mutant Al2 6e7p9g Chain: A, B Fragment: Fv Fragment Engineered: Yes Other_details: Single Chain Fv Antibody In Which The Vl And Fragments Are Joined By A Ggggsggggsggggsggggs Linker		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_variant: Rv308 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pak3000
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.690 89.850 97.260 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	SO4	enzyme
related structures	by homologous chain: 1FOR, 1TXV, 1YYL
Primary reference	Selection, characterization and x-ray structure of anti-ampicillin single-chain Fv fragments from phage-displayed murine antibody libraries., Burmester J, Spinelli S, Pugliese L, Krebber A, Honegger A, Jung S, Schimmele B, Cambillau C, Pluckthun A, J Mol Biol 2001 Jun 8;309(3):671-85. PMID:11397088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (1h8o.pdb1.gz) 38 Kb Biological Unit Coordinates (1h8o.pdb2.gz) 37 Kb LPC: Ligand-Protein Contacts for 1H8O CSU: Contacts of Structural Units for 1H8O Likely Quarternary Molecular Structure file(s) for 1H8O Structure Factors (105 Kb) Retrieve 1H8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H8O from S2C, [Save to disk] Re-refined 1h8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H8O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H8O, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h8oa2, region A:132-243 [Jmol] [rasmolscript] [script source]     - Domain d1h8oa1, region A:4-111 [Jmol] [rasmolscript] [script source]     - Domain d1h8ob2, region B:133-243 [Jmol] [rasmolscript] [script source]     - Domain d1h8ob1, region B:4-112 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h8o_A] [1h8o_B] [1h8o] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 1H8O: [IGv ] by SMART

Other resources with information on 1H8O

Community annotation for 1H8O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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