1FOR Immunoglobulin date May 24, 1994
title Structure Determination Of An Fab Fragment That Neutralizes Rhinovirus And Analysis Of The Fab-Virus Complex
authors T.J.Smith, H.Liu
compound source
Molecule: Igg2a-Kappa 17-Ia Fab (Light Chain)
Chain: L
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Igg2a-Kappa 17-Ia Fab (Heavy Chain)
Chain: H
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.800 97.300 129.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
related structures by homologous chain: 1H8O, 1I9I, 1TXV
Primary referenceStructure determination of an Fab fragment that neutralizes human rhinovirus 14 and analysis of the Fab-virus complex., Liu H, Smith TJ, Lee WM, Mosser AG, Rueckert RR, Olson NH, Cheng RH, Baker TS, J Mol Biol 1994 Jul 8;240(2):127-37. PMID:8027997
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1for.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 1FOR
  • Likely Quarternary Molecular Structure file(s) for 1FOR
  • Retrieve 1FOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FOR from S2C, [Save to disk]
    • View 1FOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FOR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FOR, from MSDmotif at EBI
  • Genome occurence of 1FOR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1forh1, region H:1-120 [Jmol] [rasmolscript] [script source]
        - Domain d1forh2, region H:121-219 [Jmol] [rasmolscript] [script source]
        - Domain d1forl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1forl2, region L:108-210 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1for_L] [1for_H] [1for]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1FOR: [IG_like] [IGv ] by SMART
    • Other resources with information on 1FOR
  • Community annotation for 1FOR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1FOR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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