1HDP Dna-Binding Protein date Mar 08, 1994
title Solution Structure Of A Pou-Specific Homeodomain: 3d-Nmr Studies Of Human B-Cell Transcription Factor Oct-2
authors M.Sivaraja, M.C.Botfield, M.Mueller, A.Jancso, M.A.Weiss
compound source
Molecule: Oct-2 Pou Homeodomain
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
related structures by homologous chain: 1OCT, 1POG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of a POU-specific homeodomain: 3D-NMR studies of human B-cell transcription factor Oct-2., Sivaraja M, Botfield MC, Mueller M, Jancso A, Weiss MA, Biochemistry 1994 Aug 23;33(33):9845-55. PMID:7914745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HDP
  • Retrieve 1HDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HDP from S2C, [Save to disk]
  • View 1HDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HDP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HDP, from MSDmotif at EBI
  • Genome occurence of 1HDP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hdp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hdp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hdp_A] [1hdp]
  • SWISS-PROT database: [P09086]
  • Domain organization of [PO2F2_HUMAN] by SWISSPFAM
  • Domain found in 1HDP: [HOX ] by SMART
  • Alignments of the sequence of 1HDP with the sequences similar proteins can be viewed for 1HDP's classification [PO2F2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PO2F2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1HDP
  • Community annotation for 1HDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HDP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science