1POG Dna Binding Protein date Oct 12, 1994
title Solution Structure Of The Oct-1 Pou-Homeo Domain Determined By Nmr And Restrained Molecular Dynamics
authors M.Cox, P.J.A.Van Tilborg, W.De Laat, R.Boelens, H.C.Van Leeuwen, P.C.Van Der Vliet, R.Kaptein
compound source
Molecule: Oct-1 Pou Homeodomain Dna-Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1HDP, 1O4X
Primary referenceSolution structure of the Oct-1 POU homeodomain determined by NMR and restrained molecular dynamics., Cox M, van Tilborg PJ, de Laat W, Boelens R, van Leeuwen HC, van der Vliet PC, Kaptein R, J Biomol NMR 1995 Jul;6(1):23-32. PMID:7663141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1POG
  • Retrieve 1POG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1POG from S2C, [Save to disk]
  • View 1POG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1POG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1POG, from MSDmotif at EBI
  • Genome occurence of 1POG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pog__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1pog from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pog_A] [1pog]
  • SWISS-PROT database: [P14859]
  • Domain organization of [PO2F1_HUMAN] by SWISSPFAM
  • Domain found in 1POG: [HOX ] by SMART
  • Other resources with information on 1POG
  • Community annotation for 1POG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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