1POG	Dna Binding Protein	date	Oct 12, 1994
title	Solution Structure Of The Oct-1 Pou-Homeo Domain Determined By Nmr And Restrained Molecular Dynamics
authors	M.Cox, P.J.A.Van Tilborg, W.De Laat, R.Boelens, H.C.Van Leeuwen, P.C.Van Der Vliet, R.Kaptein
compound		source
Molecule: Oct-1 Pou Homeodomain Dna-Binding Protein Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
method	Solution NMR
related structures	by homologous chain: 1HDP, 1O4X
Primary reference	Solution structure of the Oct-1 POU homeodomain determined by NMR and restrained molecular dynamics., Cox M, van Tilborg PJ, de Laat W, Boelens R, van Leeuwen HC, van der Vliet PC, Kaptein R, J Biomol NMR 1995 Jul;6(1):23-32. PMID:7663141

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk] CSU: Contacts of Structural Units for 1POG Retrieve 1POG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1POG from S2C, [Save to disk]

View 1POG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1POG

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1POG, from MSDmotif at EBI Genome occurence of 1POG's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pog__, region [Jmol] [rasmolscript] [script source] Fold representative 1pog from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pog_A] SWISS-PROT database: [P14859] Domain organization of [PO2F1_HUMAN] by SWISSPFAM Domain found in 1POG: [HOX ] by SMART Alignments of the sequence of 1POG with the sequences similar proteins can be viewed for 1POG's classification [PO2F1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PO2F1_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1POG

Community annotation for 1POG at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---