1HEZ Antibody date Nov 27, 2000
title Structure Of P. Magnus Protein L Bound To A Human Igm Fab.
authors M.Graille, E.A.Stura, N.G.Housden, S.P.Bottomley, M.J.Taussig, B. M.G.Gore, J.B.Charbonnier
compound source
Molecule: Kappa Light Chain Of Ig
Chain: A, C
Fragment: 1-214
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: B-Lymphocyte

Molecule: Heavy Chain Of Ig
Chain: B, D
Fragment: 501-724

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: B-Lymphocyte

Molecule: Protein L
Chain: E
Fragment: 820-880

Organism_scientific: Finegoldia Magna
Organism_taxid: 1260
Strain: 3316
Plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.185 87.335 210.538 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand IMD enzyme
related structures by homologous chain: 1AR1, 1DEE, 1YMH, 2LVE, 2PTL
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceComplex between Peptostreptococcus magnus protein L and a human antibody reveals structural convergence in the interaction modes of Fab binding proteins., Graille M, Stura EA, Housden NG, Beckingham JA, Bottomley SP, Beale D, Taussig MJ, Sutton BJ, Gore MG, Charbonnier JB, Structure (Camb) 2001 Aug;9(8):679-87. PMID:11587642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1hez.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 1HEZ
  • CSU: Contacts of Structural Units for 1HEZ
  • Likely Quarternary Molecular Structure file(s) for 1HEZ
  • Structure Factors (193 Kb)
  • Retrieve 1HEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HEZ from S2C, [Save to disk]
  • Re-refined 1hez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HEZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1heza1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1heza2, region A:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1hezb1, region B:1-121 [Jmol] [rasmolscript] [script source]
        - Domain d1hezb2, region B:122-224 [Jmol] [rasmolscript] [script source]
        - Domain d1hezc1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1hezc2, region C:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1hezd1, region D:1-121 [Jmol] [rasmolscript] [script source]
        - Domain d1hezd2, region D:122-224 [Jmol] [rasmolscript] [script source]
        - Domain d1heze_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hez] [1hez_D] [1hez_C] [1hez_A] [1hez_B] [1hez_E]
  • SWISS-PROT database: [P01834] [Q51918]
  • Domain organization of [IGKC_HUMAN] [Q51918_PEPMA] by SWISSPFAM
  • Domains found in 1HEZ: [IG_like] [IGv ] by SMART
  • Other resources with information on 1HEZ
  • Community annotation for 1HEZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HEZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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