1YMH	Immune System	date	Jan 21, 2005
title	Anti-Hcv Fab 19d9d6 Complexed With Protein L (Ppl) Mutant A6
authors	V.Granata, N.G.Housden, S.Harrison, C.Jolivet-Reynaud, M.G.Gore,
compound		source
Molecule: Fab 16d9d6, Light Chain Chain: A, C		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Cell_line: Hybridoma
Molecule: Fab 16d9d6, Heavy Chain Chain: B, D		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Cell_line: Hybridoma
Molecule: Protein L Chain: E, F Synonym: Ppl Engineered: Yes Mutation: Yes		Organism_scientific: Finegoldia Magna Organism_taxid: 334413 Strain: Atcc 29328 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 21 21 21	R_factor 0.224 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.143 111.469 148.698 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1BOG, 1CGS, 1HEZ, 1XF5
Primary reference	Comparison of the crystallization and crystal packing of two Fab single-site mutant protein L complexes., Granata V, Housden NG, Harrison S, Jolivet-Reynaud C, Gore MG, Stura EA, Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):750-4. Epub 2005, May 26. PMID:15930633

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (1ymh.pdb1.gz) 82 Kb Biological Unit Coordinates (1ymh.pdb2.gz) 81 Kb CSU: Contacts of Structural Units for 1YMH Likely Quarternary Molecular Structure file(s) for 1YMH Structure Factors (580 Kb) Retrieve 1YMH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YMH from S2C, [Save to disk] Re-refined 1ymh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YMH in 3D

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Visual 3D analysis of 1YMH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YMH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ymh_B] [1ymh_D] [1ymh_C] [1ymh_E] [1ymh_F] [1ymh] [1ymh_A] SWISS-PROT database: [Q51918] Domain organization of [Q51918_PEPMA] by SWISSPFAM Domains found in 1YMH: [IG_like] [IGv ] by SMART

Other resources with information on 1YMH

Community annotation for 1YMH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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