1XF5	Immune System	date	Sep 14, 2004
title	Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c, Y64w)In Group P21212
authors	R.Menez, N.G.Housden, S.Harrison, C.Jolivet-Reynaud, M.G.Gore, E.
compound		source
Molecule: Capsid Protein C Chain: P, Q Fragment: Residues 2-45 Synonym: Core Protein Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Hcv
Molecule: Monoclonal Antibody 19d9d6 Light Chain Chain: A, C		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Monoclonal Antibody 19d9d6 Heavy Chain Chain: B, D		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Protein L Chain: L, M Engineered: Yes Mutation: Yes		Organism_scientific: Finegoldia Magna Organism_taxid: 334413 Strain: Atcc 29328 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 21 21 2	R_factor 0.199 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.337 222.928 43.624 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1C12, 1K53, 1LMK, 1MPA, 1YMH, 2MPA
Gene Ontology	Chain Function Process Component Q, P
Primary reference	Different crystal packing in Fab-protein L semi-disordered peptide complex., Menez R, Housden NG, Harrison S, Jolivet-Reynaud C, Gore MG, Stura EA, Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):744-9. Epub 2005, May 26. PMID:15930632

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (1xf5.pdb1.gz) 90 Kb Biological Unit Coordinates (1xf5.pdb2.gz) 86 Kb CSU: Contacts of Structural Units for 1XF5 Likely Quarternary Molecular Structure file(s) for 1XF5 Structure Factors (309 Kb) Retrieve 1XF5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1XF5 from S2C, [Save to disk] Re-refined 1xf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1XF5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1XF5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1XF5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1xf5_L] [1xf5_Q] [1xf5_P] [1xf5_D] [1xf5] [1xf5_A] [1xf5_M] [1xf5_B] [1xf5_C] SWISS-PROT database: [P26661] Domain organization of [POLG_HCVJ8] by SWISSPFAM Domains found in 1XF5: [IG_like] [IGv ] by SMART

Other resources with information on 1XF5

Community annotation for 1XF5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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