1HJ3 Oxidoreductase date Jan 08, 2001
title Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
authors T.Sjogren, J.Hajdu
compound source
Molecule: Nitrite Reductase
Chain: A, B
Synonym: Cytochrome Cd1,Cytochrome Oxidase,Hydroxylamine Re
Ec: 1.7.2.1,1.7.99.1
 Organism_scientific: Paracoccus Pantotrophus
Organism_common: Thiosphaera Pantotropha
Organism_taxid: 82367
Cellular_location: Periplasm
Other_details: Organism Formerly Known As Thiosphaera Panto
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.190 61.170 100.520 90.00 112.19 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand DHE, GOL, HEC, OXY, SO4 enzyme Oxidoreductase E.C.1.7.2.1 BRENDA
related structures by homologous chain: 1DY7, 1HJ4
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceStructure of the bound dioxygen species in the cytochrome oxidase reaction of cytochrome cd1 nitrite reductase., Sjogren T, Hajdu J, J Biol Chem 2001 Apr 20;276(16):13072-6. Epub 2001 Jan 26. PMID:11278884
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (1hj3.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 1HJ3
  • CSU: Contacts of Structural Units for 1HJ3
  • Likely Quarternary Molecular Structure file(s) for 1HJ3
  • Retrieve 1HJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HJ3 from S2C, [Save to disk]
    • View 1HJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HJ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HJ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hj3a2, region A:134-567 [Jmol] [rasmolscript] [script source]
        - Domain d1hj3a1, region A:17-133 [Jmol] [rasmolscript] [script source]
        - Domain d1hj3b2, region B:134-567 [Jmol] [rasmolscript] [script source]
        - Domain d1hj3b1, region B:26-133 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hj3_A] [1hj3] [1hj3_B]
  • SWISS-PROT database: [P72181]
  • Domain organization of [NIRS_PARPN] by SWISSPFAM
    • Other resources with information on 1HJ3
  • Community annotation for 1HJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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