1HS5 Gene Regulation date Dec 22, 2000
title Nmr Solution Structure Of Designed P53 Dimer
authors T.S.Davison, X.Nie, W.Ma, Y.Li, C.Kay, S.Benchimol, C.H.Arrowsmith
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Residues 324-357
Synonym: P53, Tumor Suppressor P53
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1C26, 1PET
Primary referenceStructure and functionality of a designed p53 dimer., Davison TS, Nie X, Ma W, Lin Y, Kay C, Benchimol S, Arrowsmith CH, J Mol Biol 2001 Mar 23;307(2):605-17. PMID:11254385
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HS5
  • Original NMR restraints for 1HS5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HS5 from S2C, [Save to disk]
    • View 1HS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1HS5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HS5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hs5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hs5b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1hs5 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hs5_A] [1hs5_B]
  • SWISS-PROT database: [P04637]
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1HS5 with the sequences similar proteins can be viewed for 1HS5's classification [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1HS5
  • Community annotation for 1HS5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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