1PET Dna-Binding date Nov 24, 1994
title Nmr Solution Structure Of The Tetrameric Minimum Transforming Domain Of P53
authors W.Lee, T.S.Harvey, Y.Yin, P.Yau, D.Litchfield, C.H.Arrowsmith
compound source
Molecule: Tumor Suppressor P53
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human
Expression_system_strain: Pet
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet 19b Gene: Human
methodSolution NMR
related structures by homologous chain: 1HS5, 1PES
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSolution structure of the tetrameric minimum transforming domain of p53., Lee W, Harvey TS, Yin Y, Yau P, Litchfield D, Arrowsmith CH, Nat Struct Biol 1994 Dec;1(12):877-90. PMID:7773777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (668 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PET
  • Original NMR restraints for 1PET from PDB
  • Retrieve 1PET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PET from S2C, [Save to disk]
  • View 1PET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PET
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PET, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1peta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1petb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1petc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1petd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1pet from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pet_C] [1pet] [1pet_A] [1pet_B] [1pet_D]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Other resources with information on 1PET
  • Community annotation for 1PET at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1PET from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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