1PES Dna-Binding date Nov 24, 1994
title Nmr Solution Structure Of The Tetrameric Minimum Transforming Domain Of P53
authors W.Lee, T.S.Harvey, Y.Yin, P.Yau, D.Litchfield, C.H.Arrowsmith
compound source
Molecule: Tumor Suppressor P53
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human
Expression_system_strain: Pet
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet 19b Gene: Human
methodSolution NMR
related structures by homologous chain: 1PET, 3SAK
Primary referenceSolution structure of the tetrameric minimum transforming domain of p53., Lee W, Harvey TS, Yin Y, Yau P, Litchfield D, Arrowsmith CH, Nat Struct Biol 1994 Dec;1(12):877-90. PMID:7773777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PES
  • Retrieve 1PES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PES from S2C, [Save to disk]
    • View 1PES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1PES
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PES, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pesa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pesb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1pesc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1pesd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1pes from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pes_A] [1pes_B] [1pes_C] [1pes_D]
  • SWISS-PROT database: [P04637]
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1PES with the sequences similar proteins can be viewed for 1PES's classification [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1PES
  • Community annotation for 1PES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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