3SAK Apoptosis Cell Cycle Gene Regulation date Apr 30, 1999
title High Resolution Solution Nmr Structure Of The Oligomerization Domain Of P53 By Multi-Dimensional Nmr (Sac Structures)
authors G.M.Clore
compound source
Molecule: Protein (Tumor Suppressor P53)
Chain: A, B, C, D
Fragment: Oligomerization Domain, Residues 319 - 360
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
related structures by homologous chain: 1PES
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1220 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 3SAK
  • Retrieve 3SAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SAK from S2C, [Save to disk]
  • View 3SAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SAK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SAK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3saka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d3sakb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d3sakc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d3sakd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 3sak from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sak_A] [3sak] [3sak_C] [3sak_B] [3sak_D]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3SAK with the sequences similar proteins can be viewed for 3SAK's classification [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [P53_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3SAK
  • Community annotation for 3SAK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3SAK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science