1HUP C-Type Lectin date Sep 21, 1994
title Human Mannose Binding Protein Carbohydrate Recognition Domai Trimerizes Through A Triple Alpha-Helical Coiled-Coil
authors S.Sheriff
compound source
Molecule: Mannose-Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
symmetry Space Group: P 3 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.680 76.680 58.580 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, SO4 enzyme
related structures by homologous chain: 1MSB
Primary referenceHuman mannose-binding protein carbohydrate recognition domain trimerizes through a triple alpha-helical coiled-coil., Sheriff S, Chang CY, Ezekowitz RA, Nat Struct Biol 1994 Nov;1(11):789-94. PMID:7634089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1hup.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1HUP
  • CSU: Contacts of Structural Units for 1HUP
  • Likely Quarternary Molecular Structure file(s) for 1HUP
  • Structure Factors (71 Kb)
  • Retrieve 1HUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HUP from S2C, [Save to disk]
  • Re-refined 1hup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HUP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HUP, from MSDmotif at EBI
  • Genome occurence of 1HUP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hup_1, region 112-228 [Jmol] [rasmolscript] [script source]
        - Domain d1hup_2, region 88-111 [Jmol] [rasmolscript] [script source]
  • Fold representative 1hup from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hup_A] [1hup]
  • SWISS-PROT database: [P11226]
  • Domain organization of [MBL2_HUMAN] by SWISSPFAM
  • Domain found in 1HUP: [CLECT ] by SMART
  • Other resources with information on 1HUP
  • Community annotation for 1HUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HUP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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