1MSB Hepatic Lectin date Sep 23, 1991
title Structure Of The Calcium-Dependent Lectin Domain From A Rat Mannose-Binding Protein Determined By Mad Phasing
authors W.I.Weis, K.Drickamer, W.A.Hendrickson
compound source
Molecule: Mannose-Binding Protein-A
Chain: A, B
Engineered: Yes
Organism_scientific: Rattus Rattus
Organism_common: Black Rat
Organism_taxid: 10117
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.400 73.100 45.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand HO enzyme
related structures by homologous chain: 1BCJ, 1HUP, 1KX1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the calcium-dependent lectin domain from a rat mannose-binding protein determined by MAD phasing., Weis WI, Kahn R, Fourme R, Drickamer K, Hendrickson WA, Science 1991 Dec 13;254(5038):1608-15. PMID:1721241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1msb.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1MSB
  • CSU: Contacts of Structural Units for 1MSB
  • Likely Quarternary Molecular Structure file(s) for 1MSB
  • Retrieve 1MSB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MSB from S2C, [Save to disk]
  • View 1MSB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MSB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MSB, from MSDmotif at EBI
  • Genome occurence of 1MSB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1msba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1msbb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1msb] [1msb_A] [1msb_B]
  • SWISS-PROT database: [P19999]
  • Domain organization of [MBL1_RAT] by SWISSPFAM
  • Domain found in 1MSB: [CLECT ] by SMART
  • Other resources with information on 1MSB
  • Community annotation for 1MSB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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