1I1I Hydrolase date Feb 01, 2001
title Neurolysin (Endopeptidase 24.16) Crystal Structure
authors C.K.Brown, K.Madauss, W.Lian, W.D.Tolbert, M.R.Beck, D.W.Rodgers
compound source
Molecule: Neurolysin
Chain: P
Ec: 3.4.24.16
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbadc
symmetry Space Group: P 21 21 2
R_factor 0.224 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.600 87.700 58.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ZN enzyme Hydrolase E.C.3.4.24.16 BRENDA
related structures by homologous chain: 1S4B
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructure of neurolysin reveals a deep channel that limits substrate access., Brown CK, Madauss K, Lian W, Beck MR, Tolbert WD, Rodgers DW, Proc Natl Acad Sci U S A 2001 Mar 13;98(6):3127-32. PMID:11248043
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1i1i.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (1i1i.pdb2.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 1I1I
  • CSU: Contacts of Structural Units for 1I1I
  • Likely Quarternary Molecular Structure file(s) for 1I1I
  • Structure Factors (297 Kb)
  • Retrieve 1I1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I1I from S2C, [Save to disk]
  • Re-refined 1i1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I1I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I1I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i1ip_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i1i] [1i1i_P]
  • SWISS-PROT database: [P42676]
  • Domain organization of [NEUL_RAT] by SWISSPFAM
  • Other resources with information on 1I1I
  • Community annotation for 1I1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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